Parallelizing Assignment Problem with DNA Strands

Document Type : Research Paper

Authors

1 Computer Engineering Department, Faculty of Engineering, Ferdowsi University of Mashhad, Mashhad, Iran.

2 Computer Engineering Department, Faculty of Engineering, Ferdowsi University of Mashhad, Mashhad, Iran

Abstract

Background:Many problems of combinatorial optimization, which are solvable only in exponential time, are known to be Non-Deterministic Polynomial hard (NP-hard). With the advent of parallel machines, new opportunities have been emerged to develop the effective solutions for NP-hard problems. However, solving these problems in polynomial time needs massive parallel machines and is not applicable up to now.
Objectives: DNA (Deoxyribonucleic acid) computing provides a fantastic method to solve NP-hard problems in polynomial time. Accordingly, one of the famous NP-hard problems is assignment problem, which is designed to find the best assignment of n jobs to n persons in a way that it could maximize the profit or minimize the cost.
Material and Methods: Applying bio molecular operations of Adelman Lipton model, a novel parallel DNA algorithm have been proposed for solving the assignment problem.
Results: The proposed algorithm can solve the problem in  time complexity, and just O(n) initial DNA strand in comparison with  initial sequence, which is used by the other methods.
Conclusions: In this article, using DNA computing, we proposed a parallel DNA algorithm to solve the assignment problem in linear time.

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Iranian Journal of Biotechnology
Volume 18, Issue 1
January 2020
Pages 73-78

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